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Library Management

Use BibGenie to help organize Zotero tags, collections, metadata, and item movement.

BibGenie can do more than read papers. It can help organize your Zotero library by managing tags, creating collections, moving items, and editing metadata.

Preview before applying changes

Library management actions can modify your Zotero library. For batch operations, ask BibGenie to show a plan or preview before applying any changes.

Supported Organization Tasks

TaskExamples
Tag managementAdd, remove, and list tags
Collection managementCreate collections, list collections, move items
Metadata editingEdit title, abstract, publication title, DOI, and related fields
Metadata readingInspect authors, year, attachments, notes, and tags
Literature classificationGroup papers by topic, method, year, or project

Common Workflows

Add a shared tag

Add literature-review or a project tag to selected items.

Create a collection

Create a new collection around a research topic and move relevant papers into it.

Check metadata

Find papers missing DOI, abstract, or publication title.

Organize by theme

Group papers into a clearer library structure based on research themes.

Example Prompts

Review the selected papers and propose a collection structure by research topic. Do not modify Zotero yet.
Add the tags deep-research and llm-agent to the currently selected papers.
Find papers in this collection that are missing a DOI or abstract, and return a table.

Ask BibGenie to search or list the candidate papers.

Ask for an organization plan, including which items will be modified.

Review the plan.

Explicitly authorize BibGenie to apply the changes.

Ask for a summary of what was changed.

Set clear boundaries

For batch work, specify scope: "only selected items", "only this collection", or "do not edit metadata, only add tags".

Use Extra Care With

  • Moving many papers at once.
  • Removing tags in bulk.
  • Overwriting titles, abstracts, DOI, or other key metadata.
  • Creating or reorganizing collections across many items.

For these operations, work in smaller batches and ask BibGenie to list the affected items first.

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